This is the first paper to present such a digital redesign method for the (conventional) OKID system and apply this novel technique for nonlinear system identification. First, the Observer/Kalman filter Identification (OKID) method is used to obtain the lower-order state-space model for a stochastic chaos system. Then, a digital redesign approach with the high-gain property is applied to improve and replace the observer identified by OKID. Therefore, the proposed OKID combined with an observer-based digital redesign novel tracker not only suppresses the uncertainties and the nonlinear perturbations, but also improves more accurate observation parameters of OKID for complex Multi-Input Multi-Output systems. In this research, Chen’s stochastic chaotic system is used as an illustrative example to demonstrate the effectiveness and excellence of the proposed methodology.